Progress 09/01/17 to 08/31/18
Outputs Target Audience:We targeted small-, mid-, and large-scale growers, backyard gardners, chefs, consumers, bakers, millers, processors, researchers, scientists, and the general public. Each of these audience groups was reached through a series of field days, publications in peer reviewed academic journals, an extension bulletin, and talks at academic conferences, farmer meetings, and other venues. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?
Nothing Reported
How have the results been disseminated to communities of interest?During this reporting period we published six papers in peer-reviewed academic journals, one extension bulletin, and submitted six manuscripts for publication in peer-reviewed academic journals. Our lab groups have given multiple presentations, both poster and oral, at farmer meetings, departmental seminars and scientific conferences. These papers, manuscripts and presentations range across the following topics: quinoa breeding, physiology, high-throughput phenotyping, genetics, nutrition and food science. What do you plan to do during the next reporting period to accomplish the goals?We plan to conduct the thirdyear trials of Objective 1 and 2 above, and continue research on Objectives 3 to 5. We intend to continue to carry out a robust dissemination program (Objective 6).
Impacts What was accomplished under these goals?
In 2018, statewide variety trials were carried out in the following four states: Maryland, Minnesota, Utah, and Washington. Minnesota and Washington proved to be the environments with the highest yields across the cultivars and breeding lines. This information will assist us in determining which variety or varieties to release prior to the close of the grant. Seed is still being processed at the writing of this report, so seed yield and subsequent data will be available in the next report. One of the most common nutritional claims for quinoa is that it is a complete protein. These claims are widely accepted, though they are based only on a few varieties in a few environments. We tested this claim by examining 23 amino acids in 100 quinoa samples from four environments. Our preliminary analysis shows that for adults, many of the quinoa varieties were complete proteins, but a significant portion were not. For infants and young children, a much higher number of the quinoa varieties were not complete proteins, but a significant portion were. The limiting amino acid was most commonly Leucine. This suggest that it is important to select for amino acid content as we develop new quinoa varieties. We are also analying the functionality and consumer preference of different quinoa products. First, we are developing complete seed compositional analysis profiles of our top 25 breeding lines (and multiple others). These lines were grown in our multi-state variety trials and will continue to be analyzed for each year and location moving forward. Our goal is to identify, classify and develop different market classes of quinoa as this information is sorely lacking. The only available market classes are currently based only on seed color, whereas functionality is ignored. Second, we are conducting quinoa baking trials with pan bread, hearth bread and pancakes, where we test different quinoa/wheat ratios for quality, functionalilty and flavor. All our food science and nutritional trials made significant progress this year, and are ongoing through 2019 as well. We continued our heat and drought tolerance trials, and in 2018, two manuscripts were published on heat and/or tolerance in quinoa, and two more submitted. In one submitted manuscript, we showed a correlated peroxisome proliferation with tolerance to heat and drought stress. This could provide a relatively high-throughput method for testing for abiotic stress tolerance in quinoa as we develop new varieties. In a second submitted manuscript, we tested different spectral reflectance indices and physiological parameters in irrigated and non-irrigated treatments for their relationship with yield potential and heat and drought tolerance. We found that NDVI is the most predicitve index for seed yield in quinoa; leaf greeness index was useful for identifying heat tolerance in quinoa. In a different published paper, we showed that pollen viability under heat-stressed conditions is genotype-specific; we were able to identify genotypes with variation in pollen viability under abiotic stress, and the impact on plant growth and seed yield in quinoa. At the University of Nevada, Reno, Ashley Eustis joined the project in Fall 2017 as a graduate student in the MSc Environmental Sciences Program under the guidance of Felipe Barrios Masias. We developed protocols to grow and evaluate quinoa in greenhouses and evaluate responses to heat stress in growth chambers. Plants have been exposed to simulated heat waves based on Pullman, WA data, and we concluded that higher temperatures were necessary to observe better plant responses. Ten genotypes known to differ in heat tolerance were provided by WSU. Evaluations included: 1) Cell membrane stability from plants exposed to heat in growth chambers and from tissue exposed to heat in a laboratory setting. In the laboratory we have evaluated different incubating temperatures to define which one can provide a better separation between genotypes. At least five experiments have been conducted with no less than 120 plants per experiment (10 reps per genotype); 2) Changes in the efficiency of the photosynthetic apparatus using the PhotosynQ (https://photosynq.org/). These measurements have been conducted at pre-dawn and during the day in four round of experiments. Each experiment had at least 120 plants; 3) Leaf gas exchange measurements using the LiCor 6400. Measurements have been conducted in three experiments and two are growing in the greenhouse to conduct measurements before the end of 2018; 4) Leaf respiration using the LiCor 6400. We have conducted preliminary work to understand the effects of high temperatures to respiration. Measurements have been conducted at night. Two experiments are growing in the greenhouse and will be evaluated before the end of 2018; 5) Preliminary work is being conducted with a thermal imaging camera FLIR T530sc. Results so far indicate that quinoa has great capacity to acclimate to high temperatures and doesn't show changes in cell membrane stability and leaf gas exchange. We have also observed that the conditions in the greenhouse prior to the experiment (e.g,. minimum and maximum temperature) impact the plant response, and this is going to be taken into consideration for the upcoming experiments. Germplasm Collection:The ability of American farmers to be engaged in long-term, sustainable organic quinoa production at low altitudes will depend on breeders' access to diverse sources of genetic-based pest, disease, and heat tolerance. With that goal in mind, researchers at BYU have been collecting quinoa's wild sister species, Chenopodium berlandieri (pitseed goosefoot). From October 10-11, 2017, Rick Jellen and David Jarvis traveled to Tucson and collected 56 Chenopodium populations in Southeast Arizona. These included 14 populations of pitseed goosefoot (vars. sinuatum and zschackei) as well as populations of diploid C. arizonicum, C. fremontii, C. neomexicanum, C. palmeri, C. sonorense, and C. watsonii. During the period April 19-21, 2018, Jellen, Jarvis, and Jeff Maughan flew to South Texas and collected seed from 23 populations of the berlandieri interior ecotype, six populations of the Gulf Coast boscianum ecotype, plus seven populations of putative diploid C. albescens. Jellen collected two populations of the sinuatum ecotype of C. berlandieri above Malibu, California on June 13. On September 20-24 Jellen and Maughan flew to New England and collected nine populations of the Atlantic Coast macrocalycium ecotype. From October 3-5, Jellen and a student flew to Oklahoma and collected eight populations of the sinuatum ecotype, four of the zschackei ecotype, and eight populations of a unique ecotype with intermediate characteristics between vars. sinuatum/zschackei and berlandieri, along with numerous narrow-leaved diploid Chenopodium populations. ?Genome Wide Association Studies: Sequencing A total of 479 samples of quinoa (Chenopodium quinoa) were genotyped using tGBS® Genotyping by Sequencing technology with the restriction enzyme Bsp1286I. Samples were sequenced using an Illumina HiSeq X instrument, and reads were aligned to the Chenopodium quinoa v1.0 reference genome after debarcoding and trimming. SNP calling was conducted using only those reads that align to a single location in the reference genome. The genotyping was contracted out to Freedom Markers who generated several sets of SNPs within the population. The first set termed "ALL SNPs" is a less stringent SNP set containing 309,224 SNP sites. A second (more stringent, higher quality) set of 198,288 SNP sites was also produced wherein each SNP site was genotyped in at least 50% of the samples and to as MCR50 SNP set. Each of these SNPs is supported on average by 31 tGBS reads/SNP/genotyped sample.
Publications
- Type:
Journal Articles
Status:
Accepted
Year Published:
2018
Citation:
Murphy, K., J. Matanguihan, F. Fuentes, L. Gomez-Pando, R. Jellen, J. Maughan, D. Jarvis (2018). Advances in quinoa breeding and genomics. Plant Breeding Reviews (accepted, in press).
- Type:
Journal Articles
Status:
Published
Year Published:
2018
Citation:
Hinojosa Sanchez, L., J. Matanguihan, K. Murphy* (2018). Effect of high temperature on pollen morphology, plant growth and seed yield in quinoa. Journal of Agronomy and Crop Science (available online) https://doi.org/10.1111/jac.12302.
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Wu, G., C. Morris, K. Murphy (2017). Quinoa starch characteristics and their correlations with the texture profile analysis (TPA) of cooked quinoa. Journal of Food Science 82: 2387-2395.
- Type:
Journal Articles
Status:
Submitted
Year Published:
2019
Citation:
Noratto, G.D., K. Murphy, B.P. Chew (submitted August 2018). Quinoa intake reduces plasma and liver cholesterol, lessens obesity-associated inflammation, and helps to prevent hepatic steatosis in obese db/db mouse. Journal of Functional Foods.
- Type:
Journal Articles
Status:
Under Review
Year Published:
2019
Citation:
Sankaran, S., C.Z. Espinoza, L. Hinojosa, X. Ma, K. Murphy. High-throughput field phenotyping to assess irrigation treatment effects in quinoa. Sensors.
- Type:
Journal Articles
Status:
Submitted
Year Published:
2019
Citation:
Hinojosa, L., M. Sanad, D. Jarvis, P. Steel, K. Murphy*, A. Smertenko*. Peroxisome proliferation correlates with tolerance to heat and drought stress. Plants.
- Type:
Journal Articles
Status:
Under Review
Year Published:
2019
Citation:
Gardner, M., M.F.A. Maliro, K. Murphy, J.R. Goldberger. Assessing the potential adoption of quinoa for human consumption in central Malawi. Agriculture and Food Security.
- Type:
Journal Articles
Status:
Under Review
Year Published:
2019
Citation:
Hinojosa, L, J.A. Gonzalez, F.H. Barrious-Masias, F. Fuentes, K. Murphy. Quinoa abiotic stress responses: A review. Plants.
- Type:
Theses/Dissertations
Status:
Published
Year Published:
2018
Citation:
Leonardo Hinojosa, Ph.D. in Crop Science, Graduated Fall 2018
Dissertation: Effect of Heat and Drought Stress in Quinoa (Chenopodium quinoa Willd.)
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2018
Citation:
Halle Choi, Alecia Kiszonas, Carolyn Ross, Craig F. Morris and Kevin M. Murphy. 2018. Effect of two quinoa flour blends on the chemical and physical properties of pancakes, pan bread and hearth bread. ASA-CSSA Annual Meeting, Baltimore, MD, 2018.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2018
Citation:
Craine, E., K. Murphy. Seed Composition and Amino Acid Profiles for Quinoa Accessions Grown in Washington State. ASA-CSSA Annual Meeting, Baltimore, MD. 2018.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2018
Citation:
Cedric Habiyaremye, David White, Daniel Packer, Kurtis L. Schroeder and Kevin M. Murphy. Effect of Nitrogen and Seeding Rate on Plant Height, Seed Maturity and Seed Yield of Quinoa and Hulless Barley Grown in No-till in the Palouse. ASA-CSSA Annual Meeting, Baltimore, MD. 2018.
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Progress 09/01/16 to 08/31/17
Outputs Target Audience:We targeted small-, mid-, and large-scale growers, backyard gardners, consumers, bakers, millers, processors, researchers, scientists, and the general public. Each of these audience groups was reached through a series of field days, publications in peer reviewed academic journals, an extension bulletin, and talks at academic conferences, farmer meetings, and other venues. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?Farmer training: We conducted an On-Farm Quinoa Selection Workshop: Here we work with farmers in western Washington to conduct both positive and negative selection of multiple diverse populations. As a multi-year endeavor, we are able to show population improvement over time, as well as grow over 200 individual farmer selections in multiple environments. These selections are among the advanced genotypes that will most likely be released as varieties in the near future. How have the results been disseminated to communities of interest?Extension bulletin Oral presentations at conferences (academic, farmer-oriented, and end-user oriented) Poster presentations Field Days Workshops What do you plan to do during the next reporting period to accomplish the goals?We plan to conduct the second year trials of Objective 1 and 2 above, and begin research on Objectives 3 to 5. We intend to continue to carry out a robust dissemination program (Objective 6).
Impacts What was accomplished under these goals?
In the first year of this project we were able to 1) initiate and carry out a multi-state quinoa variety and breeding line trial (see objective 1); 2) conduct two agronomic trials which addressed the problem of finding the best management practices for quinoa in organic systemes across differing environments (see objective 2). Objectives 3 through 5 are underway and we expect positive results on these research topics after year 2 of the project. Objective 6 was reached through multiple oral and poster presentations, an extension bulletin, research papers, and field days and workshops in Year 1. This will continue throughout the project.
Publications
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2017
Citation:
Hinojosa, L., K. Murphy (2017). Evaluation of quinoa pollen under high temperature conditions. National Association of Plant Breeders, Davis, CA, August 8, 2017.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2017
Citation:
Habiyaremye, C., D. Packer, K.L. Schroeder, K. Murphy (2017). Effect of nitrogen and seeding rate on plant height, seed maturity and seed yield of quinoa and hulless barley grown in no-till farming systems in the Palouse. WSU BIOAg Symposium, Pullman, WA, March 1, 2017.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2017
Citation:
Hinojosa, L., K. Murphy (2017). Evaluation of quinoa genotypes under heat and drought field conditions. WSU BIOAg Symposium, Pullman, WA, March 1, 2017.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2016
Citation:
Hinojosa, L., K. Gill, N. Kumar, K. Murphy (2016). High-throughput phenotyping to evaluate heat stress response in quinoa. ASA-CSSA-SSSA International Annual Meeting, Phoenix, AZ, November 7, 2016.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2017
Citation:
Murphy, K. (2017). Breeding quinoa for novel environments in the climate change era. Agriculture and Climate Change Conference, Sitges, Spain, March 25, 2017.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2017
Citation:
Murphy, K. (2017). Alternative crop production in the PNW. Cascadia Grains Conference, Olympia, WA, January 6, 2017.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2016
Citation:
Murphy, K. (2016). Quinoa cultivation in western North America: Lessons learned and the path forward. ASA-CSSA-SSSA International Annual Meeting, Phoenix, AZ, November 8, 2016.
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Wu, G., C. Morris, K. Murphy (2017). Quinoa starch characteristics and their correlations with the texture profile analysis (TPA) of cooked quinoa. Journal of Food Science 82: 2387-2395.
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Aluwi, N.A., K. Murphy, G.M. Ganjyal (2017). Physicochemical characterization of different varieties of quinoa. Cereal Chemistry 94: 847-856. IF=2.402. (
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Wu, G., C.F. Morris, K. Murphy, C.F. Ross (2017). Lexicon development, consumer acceptance, and drivers of liking of quinoa varieties. Journal of Food Science 82: 993-1005. IF=1.649.
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Maliro, M.F.A., V.F. Guwela, J. Nyaika, K. Murphy (2017). Preliminary studies of the performance of quinoa (Chenopodium quinoa Willd.) genotypes under irrigated and rainfed conditions of central Malawi. Frontiers in Plant Science 8: 227.
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Jarvis, D.E., Y.S. Ho, D.J. Lightfoot, S.M. Schm�ckel, B. Li, T. Borm, H. Ohyanagi, K. Mineta, C.T. Michell, N. Saber, N.M. Kharbatia, R.R. Rupper, A.R. Sharp, N. Dally, B. Boughton, Y.H. Woo, G. Gao, E. Schijlen, X. Guo, A.A. Momin, S. Negr�o, S. Al-Babili, C. Gehring, U. R?ssner, C. Jung, K. Murphy, S. Arold, T. Gojobori, G. van der Linden, R. van Loo, E.N. Jellen, P.J. Maughan, M. Tester (2017). The genome of Chenopodium quinoa. Nature 542: 307-312.
- Type:
Theses/Dissertations
Status:
Published
Year Published:
2017
Citation:
Kristofor Ludvigson, M.S. in Crop Science, Graduated Summer 2017
Thesis: Alternative Planting and Weed Control Methodology for Certified Organic Quinoa Production in Western Washington State
- Type:
Theses/Dissertations
Status:
Published
Year Published:
2017
Citation:
Julianne Kellogg, M.S. in Crop Science, Graduated Spring 2017
Thesis: Evolutionary Participatory Quinoa Breeding for Organic Agroecosystems in the Pacific Northwest Region of the United States
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