Source: UNIV OF ALABAMA submitted to NRP
PHYSIOLOGICAL AND GENOMIC INDICATORS OF STRESS ACROSS AN URBAN-AGRICULTURE-NATURAL GRADIENT IN A NATIVE POLLINATOR
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1015505
Grant No.
2018-67012-28040
Cumulative Award Amt.
$164,987.00
Proposal No.
2017-07194
Multistate No.
(N/A)
Project Start Date
May 15, 2018
Project End Date
Oct 1, 2021
Grant Year
2018
Program Code
[A7201]- AFRI Post Doctoral Fellowships
Recipient Organization
UNIV OF ALABAMA
BOX 870344
TUSCALOOSA,AL 35487
Performing Department
Biological Sciences
Non Technical Summary
The food production needs of a growing population and changing natural landscape requires sustainable land development strategies that include pollinator conservation. As ~30% of crops rely on insect pollination, it is vital to understand how changing landscapes stress pollinators. Numerous human-generated stressors affect bee pollinators, including changes in local temperatures, diseases, nutrition, and chemical challenges, but integrative tools to diagnose bee health are lacking. This project will identify biochemical and genetic markers of stress in native bumble bees across urban-agricultural-natural gradients. I will collect Bombus impatiens in spring and summer from urban, urban garden, agricultural, and natural sites in two geographic regions. Samples will be analyzed for an array of morphological, biochemical/metabolic, and transcriptomic stress markers. Results will be analyzed in the context of land use and climate at multiple spatial scales to understand how landscape variables relate to stress physiology in native pollinators. Development and management of this project by a postdoctoral researcher will address benchmarks for developing skills required of an independent tenure-track researcher. Collaboration with K-12 students through development of an education module will strengthen outreach capabilities and encourage careers in STEM, cooperation with growers and community groups will provide experience in communicating research to stakeholders, and collaboration with undergraduate assistants will foster experiential learning at multiple levels. This Postdoctoral Research project addresses the "Plant health and production and plant products" priority area, specifically the "Pollinator Health: Research and Application" priority for basic research to promote healthy populations of animal pollinators.
Animal Health Component
(N/A)
Research Effort Categories
Basic
100%
Applied
(N/A)
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2113085108025%
2113085102025%
2113085107050%
Goals / Objectives
Numerous anthropogenic stressors affect bee pollinators, including temperature, disease, nutrition, and chemical challenges, but integrative tools to diagnose bee health are lacking. This project will identify biochemical and genetic markers of stress in native bumble bees across urban-agricultural-natural gradients.GOAL 1: Develop a set of biomarkers for rapid diagnosis of non-Apis bee stress levels and sources in anthropogenic landscapes.Objective 1: Develop biochemical tests to assess body condition in native bumble bees using biochemical/metabolic markers (glycogen, trehalose, and lipids) in wild bumble bee workers.Objective 2: Develop a diagnostic gene expression panel to identify potential sources of stress in wild bumble bees for 4 major classes of genes: 1) temperature response (heat island effects); 2) immune response (disease exposure in non-natural habitats); 3) energy utilization/metabolism (foraging and/or nutritional stress); and 4) detoxification (chemical/pesticide exposure).GOAL 2: Determine major sources of anthropogenic stress across urban-agriculture-natural gradients using integrated physiological and genetic markers of health in wild bees.Objective 1: Use biomarker panels (biochemical and genetic) to assess how these measures vary in wild bumble bees utilizing different habitats.
Project Methods
Efforts: Using Central AL and Washington, D.C. as focal regions, I will sample at three sites within each of the following land use types: urban-developed, urban-garden, agricultural, and natural. Urban-developed sites will have a high percentage of impervious surface with unmanaged floral resources. Urban gardens will be sites surrounded by impervious surfaces, with managed floral resources. Agricultural sites will be small-medium scale farms. Natural sites will be in national forest/state parks surrounded by high proportions of undeveloped habitat. I have professional and personal contacts in AL and D.C. to facilitate site selection and logistics.To capture temporal effects of stress on Bombus impatiens (a native species which is numerous at the proposed study sites), samples will be collected at each site once in the spring/early summer and once in late summer. Collections will occur on sunny mornings (> 21°C), standardizing collections among sites as much as possible. Workers will be identified by sight, collected via sweep net, and immediately flash frozen in cryovials (in situ samples; N=8) or kept in tubes on ice and returned to the lab (acclimation samples; N=4). Acclimation bees will be kept in the dark at 30°C for 24 hr to mimic nest temperature (Goulson 2010), then flash frozen. In situ samples will allow for combined measurement of acute and chronic stress in the field, and acclimated samples will measure chronic effects following a period of relaxation to minimize effects of stress experienced during the previous foraging event.I will use geographical information system data to quantify site characteristics at different spatial scales (0.5 - 5 km) around sampling sites. Sites will be characterized by % land use categories at each scale (e.g., developed, forest, grassland, crop) from the 2016 CropLand dataset (30m res.). Weather conditions will be recorded: long-term climate data will come from WorldClim and local temperature data will be tracked from data loggers left at collection sites. Estimates of local floral resources within 4m2 areas at each site will be recorded.Biochemical assays (glycogen, trehalose, and lipids) will be measured from frozen tissues (thorax, hemolymph, fat body) using spectrophotometric kit-based methods in collaboration with the Reed Lab, following protocols developed for work with Drosophila melanogaster. As covariates, body size will be estimated via intertegular distance and wing wear will be categorized as a measure of age. Data will be analyzed in R using generalized linear mixed models (GLMM), allometric regression, and ANCOVA, and multivariate response approaches (latent factor analysis, multiple linear regression, and regression trees).RNA will be extracted from the same samples (½ fat body) for cDNA synthesis and gene expression analysis. 96 genes will be selected from preliminary data and literature. Gene expression will be measured with the high-throughput RT-PCR Fluidigm Benchmark HD system (96 samples x 96 genes, including multiple housekeeping genes and sample replicates for controls; see Brunner et al. 2014 for application in Bombus). Standard deltaDeltaCt analyses, followed by ANOVA and mixed models will be used to analyze differential expression of each gene. I will examine expression across all genes using principal components analysis and identify co-expressed gene modules across habitat types following Cheviron et al. 2014.Evaluation:The success of the proposed research will be evaluated by its dissemination in (1) peer-reviewed publications (at least 2 publications), (2) professional scientific meetings (presentation of preliminary findings at least twice in year 2), and (3) public engagement (at least 3 public dissemination events, including outreach lectures to e.g., West Alabama Beekeepers Association, Alabama Audobon Society, articles in UA research magazine or local newspapers). The success of the educational module will be evaluated following implementation with the Delta TREE program in Year 2 using survey methods (pre- and post-activities). Surveys will be derived from Student Learning Outcome course assessments used at UA to track successful academic retention for key learning objectives.

Progress 05/15/18 to 10/01/21

Outputs
Target Audience:The food production needs of a growing population and changing natural landscape requires sustainable land development strategies that include pollinator conservation. As ~30% of crops rely on insect pollination, it is vital to understand how changing landscapes stress pollinators. Numerous anthropogenic stressors affect bee pollinators, including temperature, disease, nutrition, and chemical challenges, but integrative tools to diagnose bee health are lacking. This project will identify biochemical and genetic markers of stress in native bumble bees across urban-agricultural-natural gradients. I will collect Bombus impatiens in spring and summer from urban, urban garden, agricultural, and natural sites in two geographic regions. Samples will be analyzed for an array of morphological, biochemical/metabolic, and transcriptomic stress markers. Results will be analyzed in the context of land use and climate at multiple spatial scales to understand how landscape variables relate to stress physiology in native pollinators. Development and management of this project by Postdoctoral Researcher Meaghan Pimsler, with mentoring from Jeffrey Lozier (University of Alabama), will address benchmarks for developing skills required of an independent tenure-track researcher. Collaboration with K-12 students through development of an education module will strengthen outreach capabilities and encourage careers in STEM, cooperation with growers and community groups will provide experience in communicating research to stakeholders, and collaboration with undergraduate assistants will foster experiential learning at multiple levels. This Postdoctoral Research project addresses the "Plant health and production and plant products" priority area, specifically the "Pollinator Health: Research and Application" priority for basic research to promote healthy populations of animal pollinators. Changes/Problems:Additional genetic and biochemical work could not be completed due to the COVID19 outbreak as laboratories and facilities were closed for the remainder of the grant. Despite this setback, I have worked with researchers at North Carolina State University to procure funding to complete the genetic and biochemical research with the bees collected as part of this work, and we have also added an additional aspect: detection and quantification of common honey and bumble bee pathogens. We received word August of 2022 that our submission had been selected for funding and that the funds should be disbursed before the end of the fiscal year. What opportunities for training and professional development has the project provided?A number of outreach activities to various public stakeholders, land owners, and relevant interest groups were completed, and a manuscript is in preparation for publication in a National Science Teacher's Association (NSTA) journal for a lesson plan developed as part of these outreach activities. The undergraduate assistant who participated in field collections in 2018 completed his undergraduate degree, and recently accepted a graduate student position at the University of Central Florida to study native pollinators of sunflowers beginning in Fall of 2022. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? The decline of pollinators in North America is a challenge to United States (US) agriculture and a threat to national food security. The impact of human-caused landscape modifications on native bees can be immense, ranging from increased exposure to chemicals and diseases, high temperatures, especially in urban environments, and loss of nesting and/or foraging habitats, and may be a contributor to North American pollinator decline. This project aimed to develop a holistic model of pollinator physiological responses to anthropogenic stress and develop field-based genetic and biochemical markers of bumble bee health. Understanding the factors that affect bumble bee health is critical for the maintenance of the the vital ecosystem service provided by these animals. The results of this work could impact policy decisions by farmers, city planners, environmental agencies (both state and federal), and the specific scientific community working hard to address pollinator decline. A total of 2,474 bumble bees were collected from June to September in both 2018 and 2019 from a total of 35 sites in Alabama and the Washington, D.C. Metro Region with appropriate permiture and permissions from the relevant state, local, federal entities and private land owners. Temperature, humidity, and light data were also collected on-site at the beginning and end of collection bouts, as well as information about the flowers bees were collecting from, a site map, and floral density counts from ten arbitrary 1m2 sub-sampling locations. Additional genetic and biochemical work could not be completed due to the COVID19 outbreak however, as laboratories and facilities were closed for the remainder of the grant. Therefore, progress was not made on any of the other goals of the project, including: development of a 96-gene biomarker panel, high-throughput quantitativePCR to measure gene expression, or biochemical (sugar, fats, and proteins) measurement and comparisons.

Publications

  • Type: Journal Articles Status: Published Year Published: 2020 Citation: Pimsler, M.L., Oyen, K.J., Herndon, J.D. et al. Biogeographic parallels in thermal tolerance and gene expression variation under temperature stress in a widespread bumble bee. Sci Rep 10, 17063 (2020). https://doi.org/10.1038/s41598-020-73391-8


Progress 05/15/20 to 05/14/21

Outputs
Target Audience: Nothing Reported Changes/Problems:The biochemical assays were unsuccessful in test bees, and have been abandoned. I was diagnosed with severe clinical depression and started medication to manage symptoms and increase productivity. The university did not allow anyone into the lab for the final 6 months of my fellowship (February 2020 - August 2020), and so I was unable to complete the RNA extractions before I started a new job in another state (September 2020). I was unable to travel (due to COVID) for 6 months after starting this new job, and was only able to go back to Alabama to complete the RNA extractions in March 2021. I paid for my own travel and housing out of pocket, to save as much of the remaining grant monies as possible. I have been granted visiting scholar status at UA so that I may complete my work. Due to funding limitations, even with my mentor supplementing the remainder of the grant monies, it will not be possible to do all of the samples initially proposed, nor will it be possible to use the same platform. Therefore, we will be doing an amended experimental design, and will use TAGseq instead of Fluidigm multiplex qPCR. What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?I will use the remainder of the funds, plus additional funds from my mentor, to get the RNAseq completed so that I can analyze the data and publish.

Impacts
What was accomplished under these goals? Samples were all collected and RNA extraction had begun. Then COVID caused the university to shut down, and I was not allowed into the lab for the last 6 months of my fellowship. I got an extension, but I also started a new job. I have finished all of my RNA extractions in March 2021, and gotten commitments from my mentor, Dr. Jeff Lozier, to use some of his lab's funds to help pay for the sequencing for the genetic portion of the sumitted goals.

Publications


    Progress 05/15/19 to 05/14/20

    Outputs
    Target Audience:I gave talks about my research to non-STEM individuals: The Jefferson County Beekeepers Association Visitors (K-12, adults) at the Birmingham Botanical Garden Research historians at the Dumbarton Oaks Museum in Washington, D.C. Staff at the United States Botanical Garden Changes/Problems:The biochemical assays were unsuccessful in test bees, and have been abandoned. I was diagnosed with severe clinical depression and started medication to manage symptoms and increase productivity. The university did not allow anyone into the lab for the final 6 months of my fellowship (February 2020 - August 2020), and so I was unable to complete the RNA extractions before I started a new job in another state (September 2020). I was unable to travel (due to COVID) for 6 months after starting this new job, and was only able to go back to Alabama to complete the RNA extractions in March 2021. I paid for my own travel and housing out of pocket, to save as much of the remaining grant monies as possible. I have been granted visiting scholar status at UA so that I may complete my work. Due to funding limitations, even with my mentor supplementing the remainder of the grant monies, it will not be possible to do all of the samples initially proposed, nor will it be possible to use the same platform. Therefore, we will be doing an amended experimental design, and will use TAGseq instead of Fluidigm multiplex qPCR. What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?I will use the remainder of the funds, plus additional funds from my mentor, to get the RNAseq completed so that I can analyze the data and publish.

    Impacts
    What was accomplished under these goals? Samples were all collected and RNA extraction had begun. Then COVID caused the university to shut down, and I was not allowed into the lab for the last 6 months of my fellowship. I got an extension, but I also started a new job. I have finished all of my RNA extractions, and gotten commitments from my mentor, Dr. Jeff Lozier, to use some of his lab's funds to help pay for the sequencing for the genetic portion of the sumitted goals

    Publications


      Progress 05/15/18 to 05/14/19

      Outputs
      Target Audience:I gave talks about my research to non-STEM individuals: The Jefferson County Beekeepers Association Visitors (K-12, adults) at the Birmingham Botanical Garden Research historians at the Dumbarton Oaks Museum in Washington, D.C. Staff at the United States Botanical Garden Changes/Problems:The biochemical assays were unsuccessful in test bees, and have been abandoned. I was diagnosed with severeclinical depression and started medication to manage symptoms and increase productivity. The university did not allow anyone into the lab for the final 6 months of my fellowship (February 2020 - August 2020), and so I was unable to complete the RNA extractions before I started a new job in another state (September 2020). I was unable to travel (due to COVID) for 6 months after starting this new job, and was only able to go back to Alabama to complete the RNA extractions in March 2021. I paid for my own travel and housing out of pocket, to save as much of the remaining grant monies as possible. I have been granted visiting scholar status at UA so that I may complete my work. Due to funding limitations, even with my mentor supplementing the remainder of the grant monies, it will not be possible to do all of the samples initially proposed, nor will it be possible to use the same platform. Therefore, we will be doing an amended experimental design, and will use TAGseq instead of Fluidigm multiplex qPCR. What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?I will use the remainder of the funds, plus additional funds from my mentor, to get the RNAseq completed so that I can analyze the data and publish.

      Impacts
      What was accomplished under these goals? Samples were all collected and RNA extraction had begun. Then COVID caused the university to shut down, and I was not allowed into the lab for the last 6 months of my fellowship. I got an extension, but I also started a new job. I have finished all of my RNA extractions, and gotten commitments from my mentor, Dr. Jeff Lozier, to use some of his lab's funds to help pay for the sequencing for the genetic portion of the sumitted goals.

      Publications